I figure I'd a few things now that I've thought about your situation for a little bit, really high, sorry...
#1 3 Gal? Why so large of pots in a flood table? Unless your planning on grow VERY large plants I would suggest slightly smaller size. I've grown several 6' ers in 1 Gal containers in flood systems with great results & no problems with the exception of having one fall over from being top heavy (in a good way though
) don't worry she made it! I'd try & find a happy medium & go with a 1.5 or 2 gal.
#2 Fabric pots in this application have 2 issues that come to mind. 1 is minor which is the plants (if growing medium-large ones) will have a tendancy to "fall" in a given direction especially towards the middle to end of flowering when all the weight is packing on & if not restrained & tied can end badly (see reference to my personal experience above) This is a lot less likely with flat bottom plastic pots although I've seen it happen in those too but again a lot less likely .
Now on to the "BIG" concern I see in your future with these. IMO it is very important to be able to move your plants around whether it be from table to table or simply rotating/moving for optimal canopy/lighting or for cleaning table or whatever etc... Because the fabric is so, well for lack of better terms "plyable" everytime you move it or pick it up all of the hydroton & the fabric pot & the entire root zone is going to be shifting & moving a lot more than it would if it were in a "solid" pot. Rocks rubbing against other rocks are a good way to damge fragile roots & slow growth (will it kill em?, NO. Can it slow them down, Stress the hell out of her & decrease production? YES.) Once the plants root mass has completely overtaken ALL the hydroton the problem is less of a issue since the roots hold everything pretty solid but during veg stage & early flower it can really cause a lot of harm.
So my 2 cents would be to use plastic pots. but the Fabric pots will work & surely produce satisfactory results but if I had to choose well you know already.
I don't know where you live but if you have a difficult time finding plastic with drainage holes small enough to not let the hydroton fall out try finding solid ones & make your own holes or use pantyhose over the pot to hold everything in. Hope this helped!