I've been having odor issues with my scrubber as well. My setup goes: Scrubber inside of room>6"duct>6"inline fan>6" duct> 1000w HPS> 6"duct.
Is your scrubber inside of your growroom or out? Mine is inside and the fan pulls through the scrubber and then pushes through the light and out of the room. It helps but there is definitely still odor issues during flowering.
They way I had my setup was Filter>duct>Fan>exit duct. The reason I never allowed mine to be pushed through the light is because most light hoods that are supposed to be sealed have leaks where the glass is mounted so its not airtight which would pull unfiltered air through the gaps then out of the room For example Filter>duct>Light hood>Fan>duct>Fan> exit duct